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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26913410_26915641_F

Intron Information:

Intron Rank:
126834
Intron Class:
major
Intron Phase:
Intron Coordinates:
26913410 - 26915641
Intron Length:
2232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.4
34.2
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
30.2
-2.3
3.7
45.9
49.3
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018330
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046567
26912611 - 26915917
3307