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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26933241_27032558_R

Intron Information:

Intron Rank:
147204
Intron Class:
major
Intron Phase:
Intron Coordinates:
26933241 - 27032558
Intron Length:
99318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
CCGTCCTTCCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.4
33
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
63.8
0.31
1
61.7
44.5
Minor 5ss
39.3
-1.2
3
52.1
44.5
Minor BPS
40
-0.6
3.5
62.53
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026510
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026281
26931295 - 27032673
101379