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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27003448_27004058_R

Intron Information:

Intron Rank:
147915
Intron Class:
major
Intron Phase:
Intron Coordinates:
27003448 - 27004058
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTATGCAAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
61.5
44.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.2
0.88
0.6
89.2
19.7
Minor 5ss
32.3
-2
3.1
37.1
41.7
Minor BPS
43.8
-0.3
2.4
69.44
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026865
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021465
26979266 - 27004225
24960