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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27025584_27032558_R

Intron Information:

Intron Rank:
147202
Intron Class:
major
Intron Phase:
Intron Coordinates:
27025584 - 27032558
Intron Length:
6975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTAACTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.4
33
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.5
0.75
0.8
77.8
35.9
Minor 5ss
39.3
-1.2
3
52.1
44.5
Minor BPS
61.9
0.37
1.7
74.02
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026510
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023881
27025013 - 27032673
7661