Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27040531_27040995_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27040531 - 27040995

Intron Length:

465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATAA

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTCTAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

GTAAAAATAACT

Flanking Amino Acid:

YKRKGRRSSQKYRRLNKGHE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.1

24.3

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

77.6

0.62

0.9

74.3

35.1

Minor 5ss

31.8

-2.1

37.8

Minor BPS

45.7

-0.2

66.66

42.5

Associated Gene:

Gene:

HNRNPA3

Ensembl Gene ID:

ENSAPLG00000009620

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042521

27040419 - 27049457

9039

ENSAPLT00000021820

27040419 - 27049457

9039