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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27041017_27044917_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27041017 - 27044917
Intron Length:
3901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTTTTGATT
Flanking Amino Acid:
SQQKYRRLNKGHEPKEPEQL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
78
38.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.2
0.72
0.8
77.5
36.5
Minor 5ss
30.9
-2.2
3
42.6
44.2
Minor BPS
65.3
0.56
1.1
75.41
35.5

Associated Gene:

Gene:
HNRNPA3
Ensembl Gene ID:
ENSAPLG00000009620
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031163
27040419 - 27049457
9039
ENSAPLT00000021820
27040419 - 27049457
9039
ENSAPLT00000010053
27040419 - 27052160
11742
ENSAPLT00000042521
27040419 - 27049457
9039