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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27045041_27045133_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27045041 - 27045133
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAGTGT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAA
U12 Branch Point Sequence:
AGTACAGAAATG
Flanking Amino Acid:
EKWGTLTDCVVMRDPQTKRS
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
65.5
40.8
Major BPS
57.1
0.18
1
52.9
34.1
Major PPT
89.8
0.89
0.7
89.4
26.6
Minor 5ss
37.9
-1.4
3.5
52.7
46.4
Minor BPS
38.2
-1
2.3
44.37
41.6

Associated Gene:

Gene:
HNRNPA3
Ensembl Gene ID:
ENSAPLG00000009620
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031163
27040419 - 27049457
9039
ENSAPLT00000026584
27040419 - 27049457
9039
ENSAPLT00000021820
27040419 - 27049457
9039
ENSAPLT00000042521
27040419 - 27049457
9039
ENSAPLT00000010053
27040419 - 27052160
11742