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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27045281_27045362_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27045281 - 27045362
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATTATTTAAAA
Flanking Amino Acid:
VEPKRAVSREDSVKPGAHLT
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
61.3
0.35
1.6
69.62
35.7

Associated Gene:

Gene:
HNRNPA3
Ensembl Gene ID:
ENSAPLG00000009620
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010053
27040419 - 27052160
11742
ENSAPLT00000042521
27040419 - 27049457
9039
ENSAPLT00000031163
27040419 - 27049457
9039
ENSAPLT00000026584
27040419 - 27049457
9039
ENSAPLT00000021820
27040419 - 27049457
9039