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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27045917_27045992_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27045917 - 27045992
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAATG
Flanking Amino Acid:
QEMQTASSQRGRGGGSGNFM
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
100
1.24
0.5
100
0
Major PPT
69.5
0.44
1
63
42.7
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
64.3
0.31
1.5
69.74
37.7

Associated Gene:

Gene:
HNRNPA3
Ensembl Gene ID:
ENSAPLG00000009620
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031163
27040419 - 27049457
9039
ENSAPLT00000026584
27040419 - 27049457
9039
ENSAPLT00000021820
27040419 - 27049457
9039
ENSAPLT00000010053
27040419 - 27052160
11742
ENSAPLT00000042521
27040419 - 27049457
9039