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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27047464_27048704_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27047464 - 27048704
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ACTTACTAAATT
Flanking Amino Acid:
GYNEGGNFGGGNYGGSGNYN
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
58
0.33
1.9
75.01
42.1

Associated Gene:

Gene:
HNRNPA3
Ensembl Gene ID:
ENSAPLG00000009620
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021820
27040419 - 27049457
9039
ENSAPLT00000010053
27040419 - 27052160
11742
ENSAPLT00000042521
27040419 - 27049457
9039
ENSAPLT00000031163
27040419 - 27049457
9039
ENSAPLT00000026584
27040419 - 27049457
9039