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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27048831_27048923_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27048831 - 27048923
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATGAA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATCCTTAAGT
Flanking Amino Acid:
GGRSSGSPYGGGYGSGSGSG
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
72.7
31.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.6
0.8
0.7
81.4
30.6
Minor 5ss
31.5
-2.1
3.2
36.7
42.9
Minor BPS
75.8
0.89
1.6
86.37
39.1

Associated Gene:

Gene:
HNRNPA3
Ensembl Gene ID:
ENSAPLG00000009620
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031163
27040419 - 27049457
9039
ENSAPLT00000026584
27040419 - 27049457
9039
ENSAPLT00000021820
27040419 - 27049457
9039
ENSAPLT00000010053
27040419 - 27052160
11742
ENSAPLT00000042521
27040419 - 27049457
9039