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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2705569_2738984_F

Intron Information:

Intron Rank:
130297
Intron Class:
major
Intron Phase:
Intron Coordinates:
2705569 - 2738984
Intron Length:
33416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATTCCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89.8
0.89
0.7
88.1
29.1
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
69
0.59
1.6
74.98
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020088
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042807
2664607 - 2741293
76687
ENSAPLT00000020250
2702938 - 2741293
38356