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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27060446_27062486_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27060446 - 27062486
Intron Length:
2041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TGTTGCTCAATT
Flanking Amino Acid:
EELLSLPELQCLNIENDNLA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
77.1
0.61
0.9
71.2
34.1
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
60.8
0.42
2
81.06
40.8

Associated Gene:

Gene:
NFE2L2
Ensembl Gene ID:
ENSAPLG00000010103
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041207
27059147 - 27084894
25748
ENSAPLT00000033930
27059109 - 27084773
25665
ENSAPLT00000010534
27058789 - 27063823
5035