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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27062667_27063243_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27062667 - 27063243
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCAATGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AAATTCTAAATG
Flanking Amino Acid:
EAFPFIDDNEASSAAFQSMV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.7
0.49
1
61.9
44.1
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
52.6
-0
1.7
55.28
40.3

Associated Gene:

Gene:
NFE2L2
Ensembl Gene ID:
ENSAPLG00000010103
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041207
27059147 - 27084894
25748
ENSAPLT00000033930
27059109 - 27084773
25665
ENSAPLT00000010534
27058789 - 27063823
5035