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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27063340_27063502_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27063340 - 27063502
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAACT
Flanking Amino Acid:
NTEPPITFSQSTHTSKPEAE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.8
78
29.6
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
79.4
1
1.5
96.76
27.7

Associated Gene:

Gene:
NFE2L2
Ensembl Gene ID:
ENSAPLG00000010103
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041207
27059147 - 27084894
25748
ENSAPLT00000033930
27059109 - 27084773
25665
ENSAPLT00000010534
27058789 - 27063823
5035