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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27063773_27084864_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27063773 - 27084864
Intron Length:
21092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
ATTTCTATTACA
Flanking Amino Acid:
MEIERPPAAQDMNLIDILWR
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
83.9
0.76
0.8
77.7
34.7
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
58
0.24
1.9
74.64
36.2

Associated Gene:

Gene:
NFE2L2
Ensembl Gene ID:
ENSAPLG00000010103
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041207
27059147 - 27084894
25748