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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27119143_27122426_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27119143 - 27122426
Intron Length:
3284

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCGACGTGA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATAAAT
Flanking Amino Acid:
RRTCAFVWQELLKWNGW
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
47.5
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.4
0.66
0.9
83.7
25
Minor 5ss
26
-2.8
4.1
34.8
43.6
Minor BPS
54.2
0.21
1.9
78
37.6

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010738
27119120 - 27162340
43221