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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27122517_27126205_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27122517 - 27126205
Intron Length:
3689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTGACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATTGAAAA
Flanking Amino Acid:
KKGQAEFTGKRYRLGGMVLP
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
0.9
74.1
40.6
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
50.3
0.01
1.7
67.73
37.8

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040385
27111497 - 27162340
50844
ENSAPLT00000032592
27122437 - 27162340
39904
ENSAPLT00000010738
27119120 - 27162340
43221