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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27126297_27129760_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27126297 - 27129760
Intron Length:
3464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTGTATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CTACCCTTAATG
Flanking Amino Acid:
ASLEHKTTSRASLNVNDVPP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
74.4
0.55
0.9
69.2
35.7
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
68.7
0.45
1.4
65.75
42.1

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032592
27122437 - 27162340
39904
ENSAPLT00000010738
27119120 - 27162340
43221
ENSAPLT00000040385
27111497 - 27162340
50844