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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27133030_27135184_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27133030 - 27135184
Intron Length:
2155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
GGCTTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATTCTTACTT
Flanking Amino Acid:
TIISLDTSQMNRILWIDEKN
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68
0.4
1
62.3
38.7
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
65.1
0.55
1.6
78.58
38

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040385
27111497 - 27162340
50844
ENSAPLT00000010738
27119120 - 27162340
43221