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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27133030_27137759_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27133030 - 27137759
Intron Length:
4730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TTACTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACTT
Flanking Amino Acid:
TIISLDTSQMLGESGFCTGH
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.4
0.73
0.7
81.7
30
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032592
27122437 - 27162340
39904