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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27137886_27139781_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27137886 - 27139781
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TATTGTTTAAAC
Flanking Amino Acid:
KNIYGNIEDLVIHIKMVTPR
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
70.9
0.47
1.1
66.9
42.6
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
61.3
0.33
1.8
72.69
38.2

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010738
27119120 - 27162340
43221
ENSAPLT00000040385
27111497 - 27162340
50844
ENSAPLT00000032592
27122437 - 27162340
39904