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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27140510_27143146_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27140510 - 27143146
Intron Length:
2637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTCCCCTAACT
Flanking Amino Acid:
VACLREVAKQRCAPASIRLV
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
62.6
0.28
1
59.6
35.9
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
66
0.58
1.7
81.02
40.1

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032592
27122437 - 27162340
39904
ENSAPLT00000010738
27119120 - 27162340
43221
ENSAPLT00000040385
27111497 - 27162340
50844