Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27152396_27152867_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27152396 - 27152867

Intron Length:

472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTCAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTCTCTTCAACA

Flanking Amino Acid:

GVQFAPFSTCRVTQTYDAGA

Intron Amino Acid Position:

483

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

30.2

Major BPS

84.4

0.85

1.1

34.5

Major PPT

80.5

0.69

0.8

77.2

30.1

Minor 5ss

45.5

-0.5

2.9

64.1

47.4

Minor BPS

71.8

0.68

1.5

79.34

37.2

Associated Gene:

Gene:

AGPS

Ensembl Gene ID:

ENSAPLG00000010251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032592

27122437 - 27162340

39904

ENSAPLT00000010738

27119120 - 27162340

43221

ENSAPLT00000040385

27111497 - 27162340

50844