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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27153755_27162218_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27153755 - 27162218
Intron Length:
8464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTTC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATATATTGAAAC
Flanking Amino Acid:
NGGSLSHHHGVGKLRKRWMK
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
68.4
37.2
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
47.4
-0.2
3
67.5
43.9
Minor BPS
49.2
-0
1.7
61.35
36.9

Associated Gene:

Gene:
AGPS
Ensembl Gene ID:
ENSAPLG00000010251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032592
27122437 - 27162340
39904
ENSAPLT00000010738
27119120 - 27162340
43221
ENSAPLT00000040385
27111497 - 27162340
50844