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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27236802_27239396_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27236802 - 27239396
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TATTTGTTGACT
Flanking Amino Acid:
HRGTNNAFQAKSGSALAQLY
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
62.8
0.48
2.1
83.44
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010831
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011273
27227397 - 27338782
111386