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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27239507_27245163_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27239507 - 27245163
Intron Length:
5657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTACAGATAGTT
Flanking Amino Acid:
VCQLMFAMLTTAGFQEILTE
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
87.4
0.84
0.7
84.9
30
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
38.7
-0.7
2.3
60.62
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010831
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011273
27227397 - 27338782
111386