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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27245272_27245376_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27245272 - 27245376
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCATC
5'SS Class:
major
3'SS Sequence:
CTTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TACTTTTCATTT
Flanking Amino Acid:
MVQKFKIDYETLCRWLLTVR
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
49.5
-0
2.6
69.3
41.4
Minor BPS
48
-0
1.7
64.24
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010831
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011273
27227397 - 27338782
111386