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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27269001_27269371_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27269001 - 27269371
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTCTCTCATTT
Flanking Amino Acid:
FDDADQRLFEAFVIFCGLGI
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80
0.67
0.8
78.1
29
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
49.1
0.01
1.8
68.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010831
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011273
27227397 - 27338782
111386