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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27269440_27270908_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27269440 - 27270908
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATTCATATTT
Flanking Amino Acid:
PIWNSNHQIIGVAQVLNRLD
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.8
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.7
0.4
1.1
67.6
37.6
Minor 5ss
33.5
-1.9
3.4
45.9
43.3
Minor BPS
50.1
0.08
1.8
70.7
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010831
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011273
27227397 - 27338782
111386