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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27272421_27277167_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27272421 - 27277167
Intron Length:
4747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTGACCATTATT
Flanking Amino Acid:
SPKCSADTENSFKDSVEKSS
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
70.8
0.47
1
68.7
37.2
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
50.5
0.1
2
73.83
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010831
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011273
27227397 - 27338782
111386