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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27342790_27344191_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27342790 - 27344191
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAC
U12 Branch Point Sequence:
TTGCAGTTTACT
Flanking Amino Acid:
FSYSDANKNKGVTWNESTLM
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
62.6
0.31
1.1
55.1
41.7
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
45.7
-0.2
2.5
70.7
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010932
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011373
27342641 - 27344360
1720