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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27350289_27351230_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27350289 - 27351230
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCGC
5'SS Class:
major
3'SS Sequence:
ATTTTCTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCCATTAATT
Flanking Amino Acid:
SLVPDTKPIKVFIAQSRASG
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
50
43.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.9
78.2
35.7
Minor 5ss
35.6
-1.6
3.5
51.1
45.5
Minor BPS
75.1
0.87
1.5
91.07
31.7

Associated Gene:

Gene:
RBM45
Ensembl Gene ID:
ENSAPLG00000011049
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011515
27349887 - 27357482
7596