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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27351628_27352873_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27351628 - 27352873
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTGTTCTTATAT
Flanking Amino Acid:
AARAIEECDRSYRAILAEPK
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.8
73.5
37.1
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
57.8
0.32
1.7
73.56
43.1

Associated Gene:

Gene:
RBM45
Ensembl Gene ID:
ENSAPLG00000011049
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011515
27349887 - 27357482
7596