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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27353494_27354420_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27353494 - 27354420
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTGTGCTTAAAC
Flanking Amino Acid:
DVQRDPHTNNGYAVIQYSTA
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
72.8
0.51
0.9
66.6
39.1
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
64.8
0.45
1.9
75.54
40.9

Associated Gene:

Gene:
RBM45
Ensembl Gene ID:
ENSAPLG00000011049
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011515
27349887 - 27357482
7596