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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27356337_27356671_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27356337 - 27356671
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
CTTCCTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
PIVQQYRTPPQAFGGNSGSQ
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
73.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.2
0.63
0.8
76
32.5
Minor 5ss
42.4
-0.8
2.9
59
45.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
RBM45
Ensembl Gene ID:
ENSAPLG00000011049
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011515
27349887 - 27357482
7596