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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27356839_27357285_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27356839 - 27357285
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCCC
5'SS Class:
major
3'SS Sequence:
ACTACTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTTCTTACTA
Flanking Amino Acid:
LPVNVLEDVFCRFGHLIKVY
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.6
39.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80.4
0.69
0.9
77
36.4
Minor 5ss
32.2
-2
3.3
40.2
39.7
Minor BPS
66.5
0.51
1.6
74.1
38.6

Associated Gene:

Gene:
RBM45
Ensembl Gene ID:
ENSAPLG00000011049
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011515
27349887 - 27357482
7596