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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2739156_2740842_R

Intron Information:

Intron Rank:
130005
Intron Class:
major
Intron Phase:
Intron Coordinates:
2739156 - 2740842
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTGTTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.8
0.72
0.9
82.4
34
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
53.4
0.09
1.8
68.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017138
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048513
2739054 - 2741554
2501