Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_274169_274936_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

274169 - 274936

Intron Length:

768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACAAAA

U12 Branch Point Sequence:

ACATACAAAACA

Flanking Amino Acid:

FGLGTRYLSQAAALVHIYTD

Intron Amino Acid Position:

1028

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

1.1

83.4

29.3

Major BPS

60.3

0.26

65.5

Major PPT

0.59

73.5

41.9

Minor 5ss

41.1

-1

2.7

53.3

43.9

Minor BPS

45.4

-0.3

56.74

Associated Gene:

Gene:

AOX1

Ensembl Gene ID:

ENSAPLG00000008708

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022758

264624 - 306968

42345

ENSAPLT00000018331

263911 - 307009

43099

ENSAPLT00000009339

268146 - 306968

38823

ENSAPLT00000045156

267812 - 306968

39157