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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27429314_27430904_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27429314 - 27430904
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
RKWPLKGWHKRFFVLDNGLL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.2
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
86
27.2
Minor 5ss
33.1
-1.9
3.8
49.2
47.3
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022510
27412598 - 27457906
45309
ENSAPLT00000019669
27412692 - 27457906
45215
ENSAPLT00000012319
27412692 - 27457906
45215
ENSAPLT00000028619
27412598 - 27457906
45309