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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27432093_27432614_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27432093 - 27432614
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTATGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATGT
Flanking Amino Acid:
SPAANVSDGKVQQNNFPWQS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72
0.5
0.9
70
40.8
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
49.5
0.04
2.1
74.98
41.8

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019669
27412692 - 27457906
45215
ENSAPLT00000012319
27412692 - 27457906
45215
ENSAPLT00000028619
27412598 - 27457906
45309
ENSAPLT00000022510
27412598 - 27457906
45309