About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27434328_27442519_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27434328 - 27442519
Intron Length:
8192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGAAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCACCTTAAAC
Flanking Amino Acid:
VSKDAKIQLQVPFSATMSPV
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
71.7
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
32.9
-1.9
3.4
48.5
47.3
Minor BPS
66
0.48
1.5
69.55
41.2

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028619
27412598 - 27457906
45309