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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27442686_27443221_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27442686 - 27443221
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
QEEFCLMAQKVHSLLKSAFN
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.7
81.6
30.1
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028619
27412598 - 27457906
45309
ENSAPLT00000022510
27412598 - 27457906
45309
ENSAPLT00000019669
27412692 - 27457906
45215
ENSAPLT00000012319
27412692 - 27457906
45215