Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27443353_27445540_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27443353 - 27445540

Intron Length:

2188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTAATTTTAAAT

Flanking Amino Acid:

IAHLRQSLSQALNQNAELRS

Intron Amino Acid Position:

436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.2

29.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.8

0.74

87.8

28.8

Minor 5ss

48.9

-0.1

2.4

68.1

42.9

Minor BPS

0.55

1.4

78.52

37.3

Associated Gene:

Gene:

OSBPL6

Ensembl Gene ID:

ENSAPLG00000011717

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028619

27412598 - 27457906

45309

ENSAPLT00000022510

27412598 - 27457906

45309

ENSAPLT00000019669

27412692 - 27457906

45215

ENSAPLT00000012319

27412692 - 27457906

45215