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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27450948_27451129_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27450948 - 27451129
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAAAT
5'SS Class:
major
3'SS Sequence:
TGCATTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTATAT
Flanking Amino Acid:
AETDDPYERMVLIAAFAASG
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.6
0.46
1
65.7
39.7
Minor 5ss
35.4
-1.7
3.1
46.5
42.9
Minor BPS
61.7
0.45
1.7
81.77
39.4

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028619
27412598 - 27457906
45309
ENSAPLT00000022510
27412598 - 27457906
45309
ENSAPLT00000019669
27412692 - 27457906
45215
ENSAPLT00000012319
27412692 - 27457906
45215