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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27451701_27452333_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27451701 - 27452333
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACCTT
5'SS Class:
major
3'SS Sequence:
CTATTATATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTATCTTTCACT
Flanking Amino Acid:
CESKNFVFWQDIRWKNKFWG
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
67.7
43.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
76.6
0.6
1
74.4
39.3
Minor 5ss
49.2
-0
2.9
73.5
43.2
Minor BPS
65.7
0.58
1.8
80.24
42

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028619
27412598 - 27457906
45309
ENSAPLT00000022510
27412598 - 27457906
45309
ENSAPLT00000019669
27412692 - 27457906
45215
ENSAPLT00000012319
27412692 - 27457906
45215