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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27456857_27457797_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27456857 - 27457797
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
NSIEYVPKFFKKVIDANQRE
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
OSBPL6
Ensembl Gene ID:
ENSAPLG00000011717
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022510
27412598 - 27457906
45309
ENSAPLT00000019669
27412692 - 27457906
45215
ENSAPLT00000012319
27412692 - 27457906
45215
ENSAPLT00000028619
27412598 - 27457906
45309