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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27479881_27480679_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27479881 - 27480679
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATATTA
5'SS Class:
major
3'SS Sequence:
TTCTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCCTTCTTGATT
Flanking Amino Acid:
VPTLLKELTTRKINFDHCLV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
71.8
33.9
Major BPS
80
0.75
1
78.6
31
Major PPT
79.7
0.67
0.8
78
35.1
Minor 5ss
37.9
-1.4
3
48.7
46.8
Minor BPS
70.1
0.71
1.2
77.76
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012766
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013287
27476987 - 27485258
8272