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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27481628_27483432_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27481628 - 27483432
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTTCTAATA
Flanking Amino Acid:
ELYIHLDGNFELCVTPISKG
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
62.1
0.38
1.6
73.69
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012766
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013287
27476987 - 27485258
8272