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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_27487717_27489504_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27487717 - 27489504
Intron Length:
1788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
CTTTTATTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATCTCTTAAAT
Flanking Amino Acid:
PSLAYGQQGYAQGKIPPNAT
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.6
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.9
0.7
0.7
76.7
30.9
Minor 5ss
32.6
-2
3
40.7
45.3
Minor BPS
66.3
0.59
1.4
76.98
38.5

Associated Gene:

Gene:
FKBP7
Ensembl Gene ID:
ENSAPLG00000013044
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013579
27487114 - 27491850
4737